Issue 2 move folders and use deep path include file names to prevent collisions (#4)

* moving folders and files and adjust server demo build

* Fix Makefile for apps/server on Linux

* fix unit test source file folders

* fix datetime convert UTC functions. Add Code::Blocks project for datetime testing

* added some ignore extensions

* disable parallel make option

* fix build for abort, dcc, and epics apps

* fix build for dcc, epics, error, and getevent apps.

* Fixed building of all apps

* fix the ipv4 to ipv6 router app build

* Change indent style from Google to Webkit

* make pretty to re-format style

* removed common Makefile since we already had one and two was too many

* remove scripts from root folder that are no longer maintained or used

* remove mercurial EOL and ignore files for git repo

* remove .vscodeconfig files from repo

* tweak clang-format style

* clang-format src and apps with tweaked style

* added clang-tidy to fix readability if braces in src

* result of make tidy for src and apps

* fix clang-tidy mangling

* Added code::blocks project for BACnet server simulation

* added code::blocks linux project for WhoIs app

* update text files for EOL

* fix EOL in some files

* fixed make win32 apps for older gcc

* Removed Borland C++ Makefile in apps. Unable to maintain support for Borland C++ compiler.

* created codeblocks project for apps/epics for Windows

* fixing ports/xplained to work with new data structure.

* fix ports/xplained example for Atmel Studio compile

* fix ports/stm32f10x example for gcc Makefile compile

* fix ports/stm32f10x example for IAR EWARM compile

* fix ports/xplained timer callback

* fix ports/bdk_atxx_mspt build with subdirs

* fix ports/bdk_atxx_mspt build with subdirs

* updated git ignore for IAR build artifacts

* updated gitignore for non-tracked files and folders

* fixed bdk-atxx4-mstp port for Rowley Crossworks project file

* fixed bdk-atxx4-mstp port for GCC AVR Makefile

* fixed atmega168 port for IAR AVR and GCC AVR Makefile

* fixed at91sam7s port for IAR ARM and GCC ARM Makefile

* removed unmaintainable DOS, RTOS32, and atmega8 ports.  Updated rx62n (untested).

* changed arm7 to uip port

ports/stm32f10x/main.c

@@ -26,8 +26,8 @@
 #include <stdbool.h>
 #include <stdint.h>
 #include "hardware.h"
-#include "timer.h"
-#include "timer.h"
+#include "bacnet/basic/sys/mstimer.h"
+#include "bacnet/basic/sys/mstimer.h"
 #include "rs485.h"
 #include "led.h"
 #include "bacnet.h"
@@ -65,7 +65,7 @@ void lse_init(
     void)
 {
     uint32_t LSE_Delay = 0;
-    struct etimer Delay_Timer;
+    struct mstimer Delay_Timer;
 
     /* Enable access to the backup register => LSE can be enabled */
     PWR_BackupAccessCmd(ENABLE);
@@ -75,8 +75,8 @@ void lse_init(
     /* Check the LSE Status */
     while (1) {
         if (LSE_Delay < LSE_FAIL_FLAG) {
-            timer_elapsed_start(&Delay_Timer);
-            while (!timer_elapsed_milliseconds(&Delay_Timer, 500)) {
+            mstimer_set(&Delay_Timer, 0);
+            while (mstimer_remaining(&Delay_Timer) <  500) {
                 /* do nothing */
             }
             /* check whether LSE is ready, with 4 seconds timeout */
@@ -108,7 +108,7 @@ void lse_init(
 int main(
     void)
 {
-    struct itimer Blink_Timer;
+    struct mstimer Blink_Timer;
 
     /*At this stage the microcontroller clock setting is already configured,
        this is done through SystemInit() function which is called from startup
@@ -120,14 +120,14 @@ int main(
     RCC_APB2PeriphClockCmd(RCC_APB2Periph_GPIOA | RCC_APB2Periph_GPIOB |
         RCC_APB2Periph_GPIOC | RCC_APB2Periph_GPIOD | RCC_APB2Periph_GPIOE,
         ENABLE);
-    timer_init();
+    mstimer_init();
     lse_init();
     led_init();
     bacnet_init();
-    timer_interval_start(&Blink_Timer, 125);
+    mstimer_set(&Blink_Timer, 125);
     for (;;) {
-        if (timer_interval_expired(&Blink_Timer)) {
-            timer_interval_reset(&Blink_Timer);
+        if (mstimer_expired(&Blink_Timer)) {
+            mstimer_reset(&Blink_Timer);
             led_ld3_toggle();
         }
         led_task();