Issue 2 move folders and use deep path include file names to prevent collisions (#4)

* moving folders and files and adjust server demo build

* Fix Makefile for apps/server on Linux

* fix unit test source file folders

* fix datetime convert UTC functions. Add Code::Blocks project for datetime testing

* added some ignore extensions

* disable parallel make option

* fix build for abort, dcc, and epics apps

* fix build for dcc, epics, error, and getevent apps.

* Fixed building of all apps

* fix the ipv4 to ipv6 router app build

* Change indent style from Google to Webkit

* make pretty to re-format style

* removed common Makefile since we already had one and two was too many

* remove scripts from root folder that are no longer maintained or used

* remove mercurial EOL and ignore files for git repo

* remove .vscodeconfig files from repo

* tweak clang-format style

* clang-format src and apps with tweaked style

* added clang-tidy to fix readability if braces in src

* result of make tidy for src and apps

* fix clang-tidy mangling

* Added code::blocks project for BACnet server simulation

* added code::blocks linux project for WhoIs app

* update text files for EOL

* fix EOL in some files

* fixed make win32 apps for older gcc

* Removed Borland C++ Makefile in apps. Unable to maintain support for Borland C++ compiler.

* created codeblocks project for apps/epics for Windows

* fixing ports/xplained to work with new data structure.

* fix ports/xplained example for Atmel Studio compile

* fix ports/stm32f10x example for gcc Makefile compile

* fix ports/stm32f10x example for IAR EWARM compile

* fix ports/xplained timer callback

* fix ports/bdk_atxx_mspt build with subdirs

* fix ports/bdk_atxx_mspt build with subdirs

* updated git ignore for IAR build artifacts

* updated gitignore for non-tracked files and folders

* fixed bdk-atxx4-mstp port for Rowley Crossworks project file

* fixed bdk-atxx4-mstp port for GCC AVR Makefile

* fixed atmega168 port for IAR AVR and GCC AVR Makefile

* fixed at91sam7s port for IAR ARM and GCC ARM Makefile

* removed unmaintainable DOS, RTOS32, and atmega8 ports.  Updated rx62n (untested).

* changed arm7 to uip port

ports/bdk-atxx4-mstp/rs485.c

@@ -25,8 +25,8 @@
 #include <stdint.h>
 #include <stdlib.h>
 #include "hardware.h"
-#include "fifo.h"
-#include "timer.h"
+#include "bacnet/basic/sys/fifo.h"
+#include "bacnet/basic/sys/mstimer.h"
 #include "led.h"
 #include "nvdata.h"
 /* me */
@@ -51,7 +51,7 @@ static uint32_t Baud_Rate = 9600;
 static uint8_t Receive_Buffer_Data[128];
 static FIFO_BUFFER Receive_Buffer;
 
-static struct etimer Silence_Timer;
+static struct mstimer Silence_Timer;
 
 /****************************************************************************
 * DESCRIPTION: Determines the amount of silence time elapsed
@@ -61,7 +61,7 @@ static struct etimer Silence_Timer;
 bool rs485_silence_time_elapsed(
     uint16_t milliseconds)
 {
-    return timer_elapsed_milliseconds_short(&Silence_Timer, milliseconds);
+    return (mstimer_remaining(&Silence_Timer) > milliseconds);
 }
 
 /****************************************************************************
@@ -72,7 +72,7 @@ bool rs485_silence_time_elapsed(
 void rs485_silence_time_reset(
     void)
 {
-    timer_elapsed_start(&Silence_Timer);
+    mstimer_set(&Silence_Timer, 0);
 }
 
 /****************************************************************************
@@ -226,7 +226,7 @@ void rs485_bytes_send(
     }
     /* Clear the Transmit Complete flag by writing a one to it. */
     BIT_SET(UCSR0A, TXC0);
-    timer_elapsed_start(&Silence_Timer);
+    rs485_silence_time_reset();
     led_off_delay(LED_5, 1);
 
     return;
@@ -363,7 +363,7 @@ void rs485_init(
 {
     FIFO_Init(&Receive_Buffer, &Receive_Buffer_Data[0],
         (unsigned) sizeof(Receive_Buffer_Data));
-    timer_elapsed_start(&Silence_Timer);
+    rs485_silence_time_reset();
     rs485_rts_init();
     rs485_usart_init();
     rs485_init_nvdata();