Issue 2 move folders and use deep path include file names to prevent collisions (#4)

* moving folders and files and adjust server demo build

* Fix Makefile for apps/server on Linux

* fix unit test source file folders

* fix datetime convert UTC functions. Add Code::Blocks project for datetime testing

* added some ignore extensions

* disable parallel make option

* fix build for abort, dcc, and epics apps

* fix build for dcc, epics, error, and getevent apps.

* Fixed building of all apps

* fix the ipv4 to ipv6 router app build

* Change indent style from Google to Webkit

* make pretty to re-format style

* removed common Makefile since we already had one and two was too many

* remove scripts from root folder that are no longer maintained or used

* remove mercurial EOL and ignore files for git repo

* remove .vscodeconfig files from repo

* tweak clang-format style

* clang-format src and apps with tweaked style

* added clang-tidy to fix readability if braces in src

* result of make tidy for src and apps

* fix clang-tidy mangling

* Added code::blocks project for BACnet server simulation

* added code::blocks linux project for WhoIs app

* update text files for EOL

* fix EOL in some files

* fixed make win32 apps for older gcc

* Removed Borland C++ Makefile in apps. Unable to maintain support for Borland C++ compiler.

* created codeblocks project for apps/epics for Windows

* fixing ports/xplained to work with new data structure.

* fix ports/xplained example for Atmel Studio compile

* fix ports/stm32f10x example for gcc Makefile compile

* fix ports/stm32f10x example for IAR EWARM compile

* fix ports/xplained timer callback

* fix ports/bdk_atxx_mspt build with subdirs

* fix ports/bdk_atxx_mspt build with subdirs

* updated git ignore for IAR build artifacts

* updated gitignore for non-tracked files and folders

* fixed bdk-atxx4-mstp port for Rowley Crossworks project file

* fixed bdk-atxx4-mstp port for GCC AVR Makefile

* fixed atmega168 port for IAR AVR and GCC AVR Makefile

* fixed at91sam7s port for IAR ARM and GCC ARM Makefile

* removed unmaintainable DOS, RTOS32, and atmega8 ports.  Updated rx62n (untested).

* changed arm7 to uip port

ports/bdk-atxx4-mstp/bacnet.c

@@ -26,7 +26,7 @@
 #include <stdbool.h>
 /* hardware layer includes */
 #include "hardware.h"
-#include "timer.h"
+#include "bacnet/basic/sys/mstimer.h"
 #include "seeprom.h"
 #include "nvdata.h"
 #include "rs485.h"
@@ -34,25 +34,25 @@
 #include "adc.h"
 #include "led.h"
 /* BACnet Stack includes */
-#include "datalink.h"
-#include "npdu.h"
-#include "handlers.h"
-#include "client.h"
-#include "txbuf.h"
-#include "dcc.h"
-#include "iam.h"
-#include "device.h"
-#include "ai.h"
-#include "av.h"
-#include "bi.h"
-#include "bo.h"
+#include "bacnet/datalink/datalink.h"
+#include "bacnet/npdu.h"
+#include "bacnet/basic/services.h"
+#include "bacnet/basic/services.h"
+#include "bacnet/basic/tsm/tsm.h"
+#include "bacnet/dcc.h"
+#include "bacnet/iam.h"
+#include "bacnet/basic/object/device.h"
+#include "bacnet/basic/object/ai.h"
+#include "bacnet/basic/object/av.h"
+#include "bacnet/basic/object/bi.h"
+#include "bacnet/basic/object/bo.h"
 /* me */
 #include "bacnet.h"
 
 /* MAC Address of MS/TP */
 static uint8_t MSTP_MAC_Address;
 /* timer for device communications control */
-static struct itimer DCC_Timer;
+static struct mstimer DCC_Timer;
 #define DCC_CYCLE_SECONDS 1
 
 static bool seeprom_version_test(
@@ -140,7 +140,7 @@ void bacnet_init(
     apdu_set_confirmed_handler(SERVICE_CONFIRMED_DEVICE_COMMUNICATION_CONTROL,
         handler_device_communication_control);
     /* start the cyclic 1 second timer for DCC */
-    timer_interval_start_seconds(&DCC_Timer, DCC_CYCLE_SECONDS);
+    mstimer_set(&DCC_Timer, DCC_CYCLE_SECONDS*1000);
     /* Hello World! */
     Send_I_Am(&Handler_Transmit_Buffer[0]);
 }
@@ -208,8 +208,8 @@ void bacnet_task(
         }
     }
     /* handle the communication timer */
-    if (timer_interval_expired(&DCC_Timer)) {
-        timer_interval_reset(&DCC_Timer);
+    if (mstimer_expired(&DCC_Timer)) {
+        mstimer_reset(&DCC_Timer);
         dcc_timer_seconds(DCC_CYCLE_SECONDS);
     }
     /* handle the messaging */